Skip to main content
Link
Menu
Expand
(external link)
Document
Search
Copy
Copied
Colibri
Colibri Documentation
Colibri World Schema — v3 (Complete)
Colibri System
0 — Mutate. The Foundational Idea
Lifecycle of a Mutation
The Six Promises
Where Truth Lives
1 — Transport: How Mutations Enter the World
2 — Plugin: The Colibri Server
Boot Sequence
Database: data/colibri.db
Health — the `server_health` MCP tool
Middleware — Phase 0 α chain
Runtime Modes
3 — World - The Runtime Model
Physics - The Laws of the World
What Constraints Make Behavior Reliable?
Laws (physics layer)
Consensus (θ)
Proof Store (η)
Rule Engine (κ)
State Fork (ι)
Hardening — input validation, sanitization, auth (Phase 2+)
Social — The Agents of the World
Identity (ξ)
Model Router (δ)
Reputation (λ)
Multi-Surface Topology
Execution - How Work Flows
Decision Trail (ζ)
How Does the System Scale Behavior Through Agents and Contracts?
Skill Registry (ε)
Task Pipeline (β)
4 — Additions — Bridges to the Outside
5 — Time — How the World Ages
Colibri master flow — from "human says X" to "Merkle root anchored"
Phase Roadmap — When the World Comes Alive
Round
Task
Colibri Protocol Specifications
Architecture
Architecture Decision Records
ADR-001 — SQLite: node:sqlite vs better-sqlite3
ADR-002 — VRF Implementation: HMAC-based vs @noble/curves
ADR-003 — BFT Consensus: Build from scratch vs libp2p
ADR-004: Tool Surface — Phase 0 ships 14 of the 19-tool plan (locked after R75 Wave H)
ADR-005: Multi-Model Routing Deferred to Phase 1.5
ADR-006: colibri_code Semantics and the Executable-Meaning Contract
∞
Agent Contracts
Executor Contract — T3
PM Contract — T2
Sigma Orchestrator — T1 Contract
Writeback Protocol
Reference
Cross-reference index — Colibri docs by concept, axis, tier, phase, and surface
Colibri Design System
Colibri Glossary
MCP Tool Reference — Phase 0
Heritage Extractions
Guides
Agent Bootstrap Prompt — Phase 0 Builder
Implementation Guides — Index
First 7 PRs — Phase 0 Bootstrap Sequence
Task Prompts — Index
Colibri — Deep Task Breakdown for Agent Execution
Agent Handoff Protocol
Backup & Restore
Deploy
Your First PR to Colibri
Quick Start — Try Colibri
Self-Build Loop — How Colibri Builds Colibri
Troubleshooting
Write a Skill
Audits
Audit — R82.H `docs/2-plugin/health.md` vs live `server_health` payload
R82.K Audit — colibri-verification body + stale tasks-domain comments
Contracts
Contract — R82.H `docs/2-plugin/health.md` reconciliation
R82.K Contract — colibri-verification body + stale tasks-domain comments
Packets
Packet — R82.H `docs/2-plugin/health.md` rewrite plan
R82.K Packet — colibri-verification body + stale tasks-domain comments
Verifications
R82.K Verification — colibri-verification body + stale tasks-domain comments
PLAN RED — Nuke & Rebuild docs/ around World Schema v2
Session 8 seal — Phase 0 complete
AI Advisory — Algorithm Extraction
Arbitration — Algorithm Extraction
Audit — P0.7.3 ζ Chain Verification Tool
Audit — P0.9.2 ν Claude API Wrappers
Audit — R77.C .claude/skills/ mirror resync (3 drifted skills)
Audit: chore-rename-repo-facing-polish
Audit: p0-3-4-task-tools — β Task MCP Tool Surface
Audit: P0.3.3 β Writeback Contract Enforcement
Audit: P0.8.1 η Merkle Tree Construction
Audit: P0.8.2 η Three-Zone Retention
Audit: P0.8.3 η Merkle Root Finalization Tools
Audit: R76.S2 — Seal-audit staging file
Autonomous Pipeline — Function Reference
Claude API: Admin, Workspaces, Webhooks — Function Reference
Claude API: Batch — Function Reference
Claude API: Models — Function Reference
Claude API: RAG, Context, Messages — Function Reference
Claude API: Streaming — Function Reference
Claude API: Threads — Function Reference
Claude API: Tool Chain — Function Reference
Claude API: Vision + Computer Use — Function Reference
CogniMesh Approvals — Algorithm Extraction
CogniMesh Documents — Algorithm Extraction
CogniMesh Routines — Algorithm Extraction
Contract — P0.7.3 ζ Chain Verification Tool
Contract — P0.9.2 ν Claude API Wrappers
Contract — R77.C .claude/skills/ mirror resync
Contract: chore-rename-repo-facing-polish
Contract: p0-3-4-task-tools — β Task MCP Tool Surface
Contract: P0.3.3 β Writeback Contract Enforcement
Contract: P0.8.1 η Merkle Tree Construction
Contract: P0.8.2 η Three-Zone Retention
Contract: P0.8.3 η Merkle Root Finalization Tools
Contract: R76.S2 — Seal-audit staging file
Database Functions Reference
Domain: Architecture — Function Reference
Domain: Context — Function Reference
Domain: GSD — Function Reference
Domain: Integrations — Function Reference
Domain: Merkle — Function Reference
Domain: Orchestration — Function Reference
Domain: Retention — Function Reference
Domain: Roadmaps — Function Reference
Domain: Tasks — Function Reference
Domain: Thought — Function Reference
Economy Simulation — Reference
ElderState — Prompt Security Extraction
Governance (π)
GSD Workflow Engine — Function Reference
Hygiene — task-breakdown.md typo contract
Hygiene — task-breakdown.md typo packet
Hygiene — task-breakdown.md typo verification
Hygiene — task-breakdown.md typos
Integrity Monitor (μ)
Intelligence Router — Function Reference
MCP Tools Complete Reference
Middleware Chain Reference
Observability — Function Reference
P0.1 — Project Infrastructure — Agent Prompts
P0.2 — α System Core — Agent Prompts
P0.2.1 MCP Server Bootstrap — Audit
P0.2.1 MCP Server Bootstrap — Contract
P0.2.1 MCP Server Bootstrap — Packet
P0.2.1 MCP Server Bootstrap — Verification
P0.2.2 SQLite Initialization — Audit
P0.2.2 SQLite Initialization — Contract
P0.2.2 SQLite Initialization — Packet
P0.2.2 SQLite Initialization — Verification
P0.2.3 — Two-Phase Startup — Audit
P0.2.3 — Two-Phase Startup — Contract
P0.2.3 — Two-Phase Startup — Packet
P0.2.3 — Two-Phase Startup — Verification
P0.2.4 α Health Check Tool — Verification
P0.2.4 — Health Check Tool — Audit
P0.2.4 — Health Check Tool — Contract
P0.2.4 — Health Check Tool — Packet
P0.3 — β Task Pipeline — Agent Prompts
P0.3.1 β Task Pipeline State Machine — Audit
P0.3.1 β Task Pipeline State Machine — Contract
P0.3.1 β Task Pipeline State Machine — Packet
P0.3.1 β Task Pipeline State Machine — Verification
P0.3.2 β Task CRUD — Audit
P0.3.2 β Task CRUD — Contract
P0.3.2 β Task CRUD — Packet
P0.3.2 β Task CRUD — Verification
P0.4 — γ Server Lifecycle — Agent Prompts
P0.4.1 Runtime Mode Enum — Audit
P0.4.1 Runtime Mode Enum — Contract
P0.4.1 Runtime Mode Enum — Packet
P0.4.1 Runtime Mode Enum — Verification
P0.4.2 Graceful Shutdown — Audit
P0.4.2 Graceful Shutdown — Behavioral Contract
P0.4.2 Graceful Shutdown — Execution Packet
P0.4.2 Graceful Shutdown — Verification
P0.5 — δ Model Router — Agent Prompts (Phase 0 stubs shipped R75 Wave I; donor body preserved for Phase 1.5)
P0.5.1 — δ Intent Scoring Audit
P0.5.1 — δ Intent Scoring Contract
P0.5.1 — δ Intent Scoring Packet
P0.5.1 — δ Intent Scoring Verification
P0.5.2 — δ Fallback Chain Audit
P0.5.2 — δ Fallback Chain Contract
P0.5.2 — δ Fallback Chain Execution Packet
P0.5.2 — δ Fallback Chain Verification
P0.6 — ε Skill Registry — Agent Prompts
P0.6.1 ε Skill Schema — Audit
P0.6.1 ε Skill Schema — Contract
P0.6.1 ε Skill Schema — Execution Packet
P0.6.1 ε Skill Schema — Verification
P0.6.2 ε Skill CRUD + Discovery — Audit
P0.6.2 ε Skill CRUD + Discovery — Contract
P0.6.2 ε Skill CRUD + Discovery — Execution Packet
P0.6.3 ε Skill Capability Index — Audit
P0.6.3 ε Skill Capability Index — Contract
P0.6.3 ε Skill Capability Index — Execution Packet
P0.6.3 ε Skill Capability Index — Verification
P0.7 — ζ Decision Trail — Agent Prompts
P0.7.1 ζ Hash-Chained Record Schema — Audit
P0.7.1 ζ Hash-Chained Record Schema — Contract
P0.7.1 ζ Hash-Chained Record Schema — Packet
P0.7.1 ζ Hash-Chained Record Schema — Verification
P0.7.2 ζ Thought Record CRUD — Audit
P0.7.2 ζ Thought Record CRUD — Contract
P0.7.2 ζ Thought Record CRUD — Packet
P0.8 — η Proof Store — Agent Prompts
P0.9 — ν Integrations — Agent Prompts
P0.9.1 — ν MCP Bridge Audit
P0.9.1 — ν MCP Bridge Contract
P0.9.1 — ν MCP Bridge Packet
P0.9.1 — ν MCP Bridge Verification
P0.9.3 — ν Notification Channels Audit
P0.9.3 — ν Notification Channels Contract
P0.9.3 — ν Notification Channels Packet
P0.9.3 — ν Notification Channels Verification
P1.1–P1.5 — κ Rule Engine — Agent Prompts
P1.5 — δ Model Router Graduation — Agent Prompts
Packet — P0.7.3 ζ Chain Verification Tool
Packet — P0.9.2 ν Claude API Wrappers
Packet — R77.C .claude/skills/ mirror resync
Packet: chore-rename-repo-facing-polish
Packet: p0-3-4-task-tools — Execution Plan
Packet: P0.3.3 β Writeback Contract Enforcement
Packet: P0.8.1 η Merkle Tree Construction
Packet: P0.8.2 η Three-Zone Retention
Packet: P0.8.3 η Merkle Root Finalization Tools
Packet: R76.S2 — Seal-audit staging file
Predictor — AI Navigator Extraction
R75 PLAN-RED Execution — Audit
R75 PLAN-RED Execution — Contract
R75 PLAN-RED Execution — Packet
R75 PLAN-RED Execution — Verification
R76.H1 — .claude/skills/ mirror resync audit
R76.H1 — .claude/skills/ mirror resync contract
R76.H1 — .claude/skills/ mirror resync packet
R76.H1 — .claude/skills/ mirror resync verification
R76.H2 Audit — colibri-verification SKILL.md donor-ref inventory
R76.H2 Contract — colibri-verification SKILL.md behavioral contract
R76.H2 Packet — colibri-verification SKILL.md execution plan
R76.H2 Verification — colibri-verification SKILL.md rewrite
R76.H3 Heritage Tagging — Audit
R76.H3 Heritage Tagging — Contract
R76.H3 Heritage Tagging — Execution Packet
R76.H3 Heritage Tagging — Verification
R76.H4 — Audit: inventory-r74-2.md dangling references
R76.H4 — Contract: inventory-r74-2.md dangling-ref redirect
R76.H4 — Packet: inventory-r74-2.md dangling-ref redirect
R76.H4 — Verification: inventory-r74-2.md dangling-ref redirect
R76.H5 — Audit: colibri-sigma-orchestrator skill stub
R76.H5 — Contract: colibri-sigma-orchestrator skill stub
R76.H5 — Packet: colibri-sigma-orchestrator skill stub
R76.H5 — Verification: colibri-sigma-orchestrator skill stub
R76.H6 Audit — 22→23 skill count reconciliation + docs health
R76.H6 Contract — 22→23 reconciliation + docs health
R76.H6 Packet — exact file-by-file edits
R76.H6 Verification — 22→23 reconciliation + docs health
R76.P1 — κ Rule Engine Phase 1 Planning — Audit
R76.P1 — κ Rule Engine Phase 1 Planning — Contract
R76.P1 — κ Rule Engine Phase 1 Planning — Execution Packet
R76.P2 Audit — δ Phase 1.5 Graduation Plan
R76.P2 Contract — δ Phase 1.5 Graduation Plan
R76.P2 Packet — δ Phase 1.5 Graduation Plan
R76.P2 Verification — δ Phase 1.5 Graduation Plan
R76.S1 audit — session seal doc for Phase 0 close
R76.S1 contract — session seal doc behavioral contract
R76.S1 packet — session seal doc execution plan
R76.S1 verification — session seal doc evidence
R77.B — broken .md refs + _config.yml hardening — audit
R77.B — broken .md refs + _config.yml hardening — contract
R77.B — broken .md refs + _config.yml hardening — packet
R77.B — broken .md refs + _config.yml hardening — verification
R77.D audit — CLAUDE.md §9.2 doc-count drift inventory
R77.D contract — CLAUDE.md §9.2 count-reconcile policy
R77.D packet — CLAUDE.md §9.2 execution plan
R77.D verification — CLAUDE.md §9.2 reconcile evidence
R77.F1 Audit — colibri-hero.js Greek URL 404s
R77.F1 Contract — colibri-hero.js Greek URLs
R77.F1 Packet — colibri-hero.js rewrite plan
R77.F1 Verification — colibri-hero.js Greek URL fix
R77.F2 Audit — Missing section index.md files
R77.F2 Contract — Section index.md stubs
R77.F2 Packet — 10 section index.md stubs
R77.F2 Verification — 10 section index.md stubs
R81.A P1.1.1 Basis Point Arithmetic — Audit
R81.A P1.1.1 Basis Point Arithmetic — Contract
R81.A P1.1.1 Basis Point Arithmetic — Packet
R81.A verification — P1.1.1 Basis Point Arithmetic
R81.B / P1.2.1 — Lexer / Tokenizer — Audit
R81.B / P1.2.1 — Lexer / Tokenizer — Contract
R81.B / P1.2.1 — Lexer / Tokenizer — Execution Packet
R81.C Audit — docs/5-time/roadmap.md reconcile
R81.C Contract — docs/5-time/roadmap.md reconcile
R81.C Packet — docs/5-time/roadmap.md reconcile
R81.C verification — docs/5-time/roadmap.md reconcile
R82.D — Launcher Config Audit
R82.D — Launcher Config Contract
R82.D — Launcher Config Execution Packet
R82.D — Launcher Config Verification
R82.F — deploy.md + boot.md behavioral contract
R82.F — deploy.md + boot.md drift audit
R82.F — deploy.md + boot.md execution packet
R82.F — deploy.md + boot.md verification evidence
R82.G — spec/ + world-schema.md drift audit
R82.G — spec/ + world-schema.md execution packet
R82.G — spec/ + world-schema.md reconciliation contract
R82.G — spec/ + world-schema.md verification
R83.A P1.1.2 Determinism Verification Harness — Audit
R83.A P1.1.2 Determinism Verification Harness — Contract
R83.A P1.1.2 Determinism Verification Harness — Packet
R83.A verification — P1.1.2 Determinism Verification Harness
R83.B P1.1.3 BPS Constants + Overflow Protection — Audit
R83.B P1.1.3 BPS Constants + Overflow Protection — Contract
R83.B P1.1.3 BPS Constants + Overflow Protection — Packet
R83.B P1.1.3 BPS Constants + Overflow Protection — Verification
R83.C / P1.2.1 — Lexer retry — Debug Audit
R83.C / P1.2.1 — Lexer retry — Fix Packet
R83.C / P1.2.1 — Lexer retry — Verification
RAG Search — Function Reference
S01 — Constitution
S02 — Event Taxonomy
S03 — State Model
S04 — Reputation
S05 — Experience Tokens
S06 — Consensus
S07 — Fork Protocol
S08 — Gossip & State Roots
S09 — Arbitration
S10 — Admission Gates
S11 — Rule Engine
S12 — DSL
S13 — Hardening
S14 — Integrity Monitor
S15 — GSD Contract
S16 — Skill Taxonomy
S17 — MCP Tool Surface
S18 — Governance Protocol
S18 — Soul Vector Identity
Security Layer Reference
Verification — P0.7.2 ζ Thought CRUD
Verification — P0.7.3 ζ Chain Verification Tool
Verification — P0.9.2 ν Claude API Wrappers
Verification — R77.C .claude/skills/ mirror resync
Verification: chore-rename-repo-facing-polish
Verification: p0-3-4-task-tools — β Task MCP Tool Surface
Verification: P0.3.3 β Writeback Contract Enforcement
Verification: P0.6.2 ε Skill Registry CRUD
Verification: P0.8.1 η Merkle Tree Construction
Verification: P0.8.2 η Three-Zone Retention
Verification: P0.8.3 η Merkle Root Finalization Tools
Verification: R76.S2 — Seal-audit staging file
α System Core — Algorithm Extraction
β Task Pipeline — Algorithm Extraction
γ Server Lifecycle — Algorithm Extraction
δ Model Router — Algorithm Extraction
ε Skill Registry — Algorithm Extraction
ζ Decision Trail — Algorithm Extraction
η Proof Store — Algorithm Extraction
θ Consensus — Algorithm Extraction
ι State Fork — Algorithm Extraction
κ Rule Engine — Algorithm Extraction
λ Reputation — Algorithm Extraction
ν Integrations — Algorithm Extraction
ξ Identity — Algorithm Extraction
π Governance — Algorithm Extraction
Search Colibri
Repository